Welcome to my blog!

I am currently pursuing my Master’s thesis in Bioinformatics at the University of Hamburg. My focus lies in cheminformatics and drug discovery, driven by the motivation to develop better drugs faster and more cost-effectively. In this blog I will share anything I find interesting, be it related to my studies or not. I hope you find something useful here as well.

The Chemical Space Concept

The chemical space describes the space of all possible drug-like molecules and is estimated to be around $10^{60}$(1). This vast amount of potential compounds is called chemical space. I like to think of it as a multidimensional-space, where each dimension represent a porperty or feature and each point a possible molecule. Source: 2 This means if we had the perfect set of molecular properties, we could define a desirable subspace within the vastness of chemical space. A practical way to do this is through a Multi-Parameter Optimization (MPO) approach. Instead of a single, perfect scoring function, we define this subspace as the collection of all molecules that simultaneously satisfy multiple property constraints. Using this MPO framework, we can formally define the subspace S as: ...

July 6, 2025 · 2 min · Marius Rueve